Portal Software Release Notes

Note that code level release notes may found on GitHub. The following details user facing features / changes covered in each release.

5.1.6 - July 17th, 2017

  • Stacked bar charts on entity pages are now clickable
  • Compounds page displays current query similar to advanced search
  • Various UI fixes including a specific fix for page jitter in firefox

5.0.14 - May 18th, 2017

  • Updated pathway viewer to use OnoJS build
  • Improvements to Genome Viewer
  • Added Chromosome facet to advanced search
  • General UI touchups and bug fixes

5.0.6 - March 2nd, 2017

  • Fixes related to the ranking of search results
  • Minor UI updates

5.0.4 - February 7th, 2017

  • DCC Portal has been updated to support Elasticsearch 5.1.2
  • Minor bug fixes

4.4.3 - January 30th, 2017

  • Added new page not found redirection
  • New share link popover behaviour
  • Fix to reported sizes in the UI, will use base 10 instead of base 2.
  • New page for searching Compounds
  • Minor bug fixes

4.2.6 - July 5th, 2016

4.2.3 - June 23rd, 2016

  • Added support for "Not filtering" in Advanced Search
  • Added facet charts in the Repository Browser
  • Removed TCGA repository in the Repository Browser as this is replaced with GDC
  • Added GDC clinical and biospecimen files in the Repository Browser
  • Unified behaviours for "copy to clipboard" widgets
  • Charting library upgrades
  • Various bug fixes

4.2.2 - June 15th, 2016

  • GDC files published in the Repository Browser.
  • Support for saving, sharing and searching by File Sets in Repository Browser
  • Added support for searching by Manifest ID in the Repository Browser
  • Added support for searching by Submitter Bundle ID in the Repository Browser
  • Changed software hosting to https://artifacts.oicr.on.ca
  • Improved loading icon placement
  • Various bug fixes

4.0.25 - June 8th, 2016

4.0.24 - June 7th, 2016

  • Can search for files based on Bundle ID, and the Bundle ID will be shown for file results in keyword search.
  • The Gene entity page will now show all available drugs instead of limiting to a list of 10 results.
  • Clicking on clinical trials from the gene page will now scroll to the trials section of compound page.
  • Various bug fixes

4.0.14 - May 4th, 2016

  • Iobio integration added to VCF files stored in AWS/Collaboratory. e.g. Go to VCF Stats section in https://dcc.icgc.org/repositories/files/FI378419
  • Fixed truncated or failing downloads that were occuring for some users.
  • Various minor bug fixes.

3.8.20 - Nov 27, 2015 - Nov 18, 2015 - Oct 28, 2015

  • Displayed Pathway Viewer from Reactome Pathway Entity Page, (e.g. https://dcc.icgc.org/genesets/R-HSA-392154, click on "Pathway Viewer" section in the navigation bar: mutated genes are highlighted and mutation count is displayed at the top-right corner of the entity. User should click on entity to view details about genes and mutation count)
  • Displayed Pathway Viewer from an Enrichment Analysis for all the enriched gene sets (e.g. https://icgc.org/Zir, click on "Open in Pathway Viewer" and navigate through the reactome pathways to view pathway diagrams)
  • Enhanced data repositories, e.g. assigned a File ID FI99999, added Specimen Type facet (link: https://dcc.icgc.org/repositories
  • Updated File Entity Page layout (e.g. https://dcc.icgc.org/repositories/files/FI9995)
  • When navigating from Donor Entity page to Genome Viewer, the mutation sorting and filter is now carried over
  • Significantly reduced the load time of stacked bar chart in Project Summary page (https://dcc.icgc.org/projects
  • Refactored Browser API to fix various problems that could result in error 500s being returned
  • Bug fixes for Project Sample Sheet, Pie Chart colouring - Sept 22, 2015

  • Added functionality to view files in external repositories based on filters from advanced search (Go to https://dcc.icgc.org/search, select your filters then in Donor tab click on "View in External Repositories" ). Documentation is available here
  • Added functionality to download donor data and view donor sets in external repositories browser from Data Analysis (icons are available for saved donor sets here: https://dcc.icgc.org/analysis/sets)
  • Added functionality to upload a donor set in Donor facet in Advanced Search (https://dcc.icgc.org/search and External Repositories browser (https://dcc.icgc.org/repositories)
  • Added full screen support for Genome Viewer
  • Added Tumor Types facet in Projects page (https://dcc.icgc.org/projects)
  • Bug fixes for gene query in the case of no donor analysis and for Pathway Viewer - July 3, 2015 - June 16, 2015

  • Added DCC - External Repository feature. User can search for ICGC-Donor files stored in external repository and create a manifest to download them. Documentation is available here: http://docs.icgc.org/portal/repositories
  • Added Study facet to filter PCAWG (Pan-Cancer Analysis of Whole Genome) Donors in Advanced Search - Donor tab, e.g. PCAWG Donors in Advanced Search
  • Added support for clinical supplementary files (family, exposure, therapy). Displayed in Donor Entity Page and exported in Donors files
  • Added support for pending donors and projects.
  • Added preliminary UI / API support for "donor states". API documentation available here: https://dcc.icgc.org/docs/
  • Reduced project colour space to primary sites
  • Bug fixes and core javascript libraries upgrades - April 7, 2015 - March 16, 2015 - February 11, 2015 - January 21, 2015 - December 3, 2014

3.5.12 - September 29, 2014

  • Fixed bug wherein a DACO authorization was being denied to ICGC.org (non-OpenID) users with granted access
  • Improved general client-side page responsiveness

3.5 - September 12, 2014

  • Upgraded to Genome Maps 1.1.7
  • Improved site performance through better caching
  • Added "Multiple Observations per Donor Mutation Occurrence" feature
  • Added "Short URL" feature
  • Added "Repository URL Right-click to Copy" feature

3.2 - May 15, 2014

  • Added "Aggregated SSM VCF" feature
  • Added "Pathway Entity Page" feature
  • Added "Pathway Search" feature
  • Added "Gene Sets" feature
  • Added "Functional Impact" feature
  • Added "Project Search" feature
  • Added "Authentication and Authorization" feature
  • Added "Controlled Access Download" feature
  • Added "Asynchronous Download" feature
  • Added "Public RESTful API" feature