Dictionary v0.8d

Mar., 2014. Release 16

NEW: Our new Dictionary Comparison Tool highlights differences between different dictionary versions. Please try it out here

March 31th 2014

Change between 0.8c and 0.8d:

  • Modified MVEL script restriction for "mutated_to_allele" in SSM Primary data file specification to handle homozygous -> heterozygous mutations.

March 19th 2014

Change between 0.8b and 0.8c:

  • Changed "total_read_count" in exp_seq_m and mirna_seq_m to accept N/A reserve codes. Also added a link to WHO International Histological Classification of Tumours for the "tumour_histological_type" field in specimen data specification

March 11th 2014

Change between 0.8a and 0.8b:

  • Added a MVEL script restriction for "mutated_to_allele" field in Simple Somatic Mutations Primary File (ssm_p). See example here
Changes to Specifications Since Version 0.7e (Jan., 2014)

Improvements:

NOTE: For Array-based methylation data, probe IDs will be cross-referenced against array manifest files. Please click here for additional details. If your array manifest file is not included in the list, please contact DCC.

  • Please see our dictionary diff tool here for more information

Revisions to Data Elements: Additions

Analyzed Sample Data File (sample)

Data Element ID Comment
study
  • new
  • allows submitter to indicate if sample is part of study (ie. PanCancer)

Revisions to Data Elements: Changes

Copy Number Somatic Mutations (cnsm) - Primary Analysis File (p):

Data Element ID Comment
biological_validation_status changed to accept N/A reserve code -888

Simple Somatic Mutations (ssm) - Primary Analysis File (p):

Data Element ID Comment
biological_validation_status changed to accept N/A reserve code -888